STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sptlc1Serine palmitoyltransferase long chain base subunit 1. (476 aa)    
Predicted Functional Partners:
sptssa
Serine palmitoyltransferase small subunit A.
    
 0.995
sptlc2
Serine palmitoyltransferase long chain base subunit 2.
  
0.991
sptlc3
Serine palmitoyltransferase long chain base subunit 3.
  
0.986
LOC114763844
Serine palmitoyltransferase 2-like.
  
0.986
LOC114795768
ORM1-like protein 3.
    
 0.983
ormdl1
ORMDL sphingolipid biosynthesis regulator 1.
    
 0.983
LOC114797974
ORM1-like protein 2.
    
 0.983
ism1
Isthmin 1.
   
 0.981
LOC114763858
Isthmin-2-like.
   
 0.980
ENSDCDP00000042362
Serine palmitoyltransferase, small subunit B.
    
 0.969
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.