STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114784641Casein kinase I. (405 aa)    
Predicted Functional Partners:
ltv1
LTV1 ribosome biogenesis factor.
    
 0.976
bysl
Bystin like.
    
 0.953
riok2
RIO kinase 2.
    
 0.939
csnk1a1
Casein kinase 1 alpha 1.
  
 
0.921
tsr1
TSR1 ribosome maturation factor.
    
 0.919
LOC114783792
Period circadian protein homolog 3-like.
    
 0.889
LOC114800594
Period circadian protein homolog 3-like.
    
 0.889
LOC114796085
Period circadian protein homolog 1-like.
    
 0.889
LOC114788189
Period circadian protein homolog 2-like.
    
 0.889
nob1
NIN1 (RPN12) binding protein 1 homolog.
    
 0.886
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.