STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mterf3Mitochondrial transcription termination factor 3. (432 aa)    
Predicted Functional Partners:
fastkd2
FAST kinase domains 2.
   
 
 0.850
ENSDCDP00000051567
Mitochondrial ribosomal protein L36.
    
 
 0.802
mrpl20
Mitochondrial ribosomal protein L20.
    
 
 0.800
ykt6
YKT6 v-SNARE homolog.
     
 0.764
gosr1
Golgi SNAP receptor complex member 1.
     
 0.764
mrrf
Mitochondrial ribosome recycling factor.
    
 
 0.735
mrpl19
Mitochondrial ribosomal protein L19.
   
 
 0.734
ddx28
DEAD-box helicase 28.
    
 
 0.733
LOC114791204
Pentatricopeptide repeat-containing protein 1, mitochondrial-like.
    
 
 0.714
mrps9
Mitochondrial ribosomal protein S9.
   
   0.679
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.