STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
elavl4ELAV like RNA binding protein 4. (452 aa)    
Predicted Functional Partners:
ccna2
Cyclin A2.
   
 
 0.727
LOC114777367
Transformer-2 protein homolog beta-like.
  
 0.651
LOC114797684
Embryonic polyadenylate-binding protein-like.
  
 
0.633
pabpc4
poly(A) binding protein cytoplasmic 4.
  
 
0.632
LOC114770024
Polyadenylate-binding protein 1.
  
 
0.632
LOC114790006
Polyadenylate-binding protein 1-like.
  
 
0.631
tra2b
Transformer 2 beta homolog.
  
 0.628
cirbp
Cold inducible RNA binding protein.
  
 0.603
ncl
Nucleolin.
   
0.600
LOC114787010
5'-AMP-activated protein kinase catalytic subunit alpha-1-like.
     
 0.594
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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