STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
smcr8SMCR8-C9orf72 complex subunit. (885 aa)    
Predicted Functional Partners:
wdr41
WD repeat domain 41.
    
 0.988
LOC114789063
Guanine nucleotide exchange C9orf72-like.
    
 0.981
LOC114789671
Guanine nucleotide exchange C9orf72-like.
    
 0.981
ulk1
Unc-51 like autophagy activating kinase 1.
    
 0.917
ulk2
Unc-51 like autophagy activating kinase 2.
    
 0.907
tbk1
TANK binding kinase 1.
   
 0.901
rab8a
RAB8A, member RAS oncogene family.
    
 0.899
rab39b
RAB39B, member RAS oncogene family.
    
 0.891
LOC114796913
Uncharacterized LOC114796913.
     
 0.876
LOC114770043
Ras-related protein Rab-39B-like.
    
 0.868
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.