Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fbxl12F-box and leucine rich repeat protein 12. (386 aa)    
Predicted Functional Partners:
skp1
S-phase kinase associated protein 1.
    
 0.983
LOC114787973
Cullin-1.
    
 0.967
cul1
Cullin 1.
    
 0.967
LOC114793696
RING-box protein 1.
    
 0.910
LOC114793901
RING-box protein 1.
    
 0.910
fbxw8
F-box and WD repeat domain containing 8.
    
 0.813
styx
Serine/threonine/tyrosine interacting protein.
    
   0.748
srp72
Signal recognition particle 72.
      
 0.741
UBL5
Ubiquitin like 5.
      
 0.733
CUL3
Cullin-3-like.
    
 0.646
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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