STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yif1aYip1 interacting factor homolog A, membrane trafficking protein. (305 aa)    
Predicted Functional Partners:
selenos
Selenoprotein S.
   
 
 0.847
LOC114794873
Protein YIPF7-like.
   
 
 0.847
yipf5
Yip1 domain family member 5.
   
 
 0.847
yipf4
Yip1 domain family member 4.
   
 
 0.843
rabac1
Rab acceptor 1.
   
 
 0.835
maea
Macrophage erythroblast attacher.
   
 
 0.781
unc50
Unc-50 inner nuclear membrane RNA binding protein.
      
 0.566
ier3ip1
Immediate early response 3 interacting protein 1.
    
 
 0.548
LOC114799301
Ras-related protein Rab-1B.
   
 
 0.533
LOC114787147
Ras-related protein Rab-1A-like.
   
 
 0.533
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.