STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114786179Stromal cell-derived factor 1-like. (99 aa)    
Predicted Functional Partners:
LOC114789099
C-C motif chemokine 20-like.
    
 0.988
cxcl14
C-X-C motif chemokine ligand 14.
  
 
 0.985
ackr3
Atypical chemokine receptor 3.
    
 0.985
LOC114797044
Atypical chemokine receptor 3-like.
    
 0.981
LOC114773757
Atypical chemokine receptor 3-like.
    
 0.981
CXCR4
C-X-C chemokine receptor type 4-like.
   
 0.966
LOC114788710
C-C motif chemokine 25-like.
    
 0.954
LOC114802371
C-C motif chemokine 25-like.
    
 0.954
ccr7
C-C motif chemokine receptor 7.
    
 0.950
cxcr5
C-X-C motif chemokine receptor 5.
    
 0.950
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.