STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
paxbp1PAX3 and PAX7 binding protein 1. (903 aa)    
Predicted Functional Partners:
snrnp200
Small nuclear ribonucleoprotein U5 subunit 200.
    
  0.918
tfip11
Tuftelin interacting protein 11.
    
 0.905
dhx15
DEAH-box helicase 15.
    
 0.885
snrnp40
Small nuclear ribonucleoprotein U5 subunit 40.
    
  0.880
ascc3
Activating signal cointegrator 1 complex subunit 3.
    
  0.850
syf2
SYF2 pre-mRNA splicing factor.
    
  0.842
snw1
SNW domain containing 1.
    
 0.824
bud31
BUD31 homolog.
    
  0.819
dqx1
DEAQ-box RNA dependent ATPase 1.
    
 0.817
dhx32
DEAH-box helicase 32 (putative).
    
 0.817
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.