STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rnf123Ring finger protein 123. (1230 aa)    
Predicted Functional Partners:
ubac1
UBA domain containing 1.
   
 
 0.928
usp19
Ubiquitin specific peptidase 19.
   
 0.797
usp11
Ubiquitin specific peptidase 11.
   
 0.797
usp4
Ubiquitin specific peptidase 4.
   
 0.625
USP15
Ubiquitin specific peptidase 15.
   
 0.625
usp43
Ubiquitin specific peptidase 43.
   
 0.617
LOC114802516
Ubiquitin carboxyl-terminal hydrolase 32-like.
   
 0.617
LOC114793558
Ubiquitin carboxyl-terminal hydrolase 43-like.
   
 0.617
usp31
Ubiquitin specific peptidase 31.
   
 0.617
LOC114793031
Ubiquitin carboxyl-terminal hydrolase 32-like.
   
 0.617
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.