STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tsen54tRNA splicing endonuclease subunit 54. (525 aa)    
Predicted Functional Partners:
tsen2
tRNA splicing endonuclease subunit 2.
    
 0.998
tsen34
tRNA splicing endonuclease subunit 34.
   
 0.985
clp1
Cleavage and polyadenylation factor I subunit 1.
    
 0.982
tsen15
tRNA splicing endonuclease subunit 15.
    
 0.972
kri1
KRI1 homolog.
   
 
  0.930
pop4
POP4 homolog, ribonuclease P/MRP subunit.
   
 
  0.926
rpp30
Ribonuclease P/MRP subunit p30.
     
 0.926
rpp40
Ribonuclease P/MRP subunit p40.
     
 0.925
dicer1
Dicer 1, ribonuclease III.
   
 
  0.921
drosha
Drosha ribonuclease III.
   
 
  0.914
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.