STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114800118RNA-binding protein Musashi homolog 1-like. (347 aa)    
Predicted Functional Partners:
cstf2
Cleavage stimulation factor subunit 2.
  
 
 0.947
zc3h14
Zinc finger CCCH-type containing 14.
    
 
 0.913
cpsf4
Cleavage and polyadenylation specific factor 4.
    
 0.839
dazap1
DAZ associated protein 1.
  
  
 
0.838
cpsf1
Cleavage and polyadenylation specific factor 1.
    
 0.822
twf2
WD repeat domain 82.
   
 0.805
pcf11
PCF11 cleavage and polyadenylation factor subunit.
     
 0.800
papolg
poly(A) polymerase gamma.
     
 0.795
SYMPK
Symplekin-like.
   
 0.784
clp1
Cleavage and polyadenylation factor I subunit 1.
     
 0.783
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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