STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmc4C-X9-C motif containing 4. (79 aa)    
Predicted Functional Partners:
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.997
LOC114788971
FACT complex subunit SSRP1-like.
    
 0.872
LOC114792144
Lysine-specific demethylase 6B-like.
    
 0.850
kdm6b
Lysine demethylase 6B.
    
 0.850
kdm6a
Lysine demethylase 6A.
    
 0.850
LOC114764398
Lysine-specific demethylase 6A-like.
    
 0.850
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
 0.822
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.818
tp53bp1
Tumor protein p53 binding protein 1.
    
 0.817
ENSDCDP00000038449
annotation not available
   
  0.817
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.