STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gldcGlycine decarboxylase. (977 aa)    
Predicted Functional Partners:
LOC114782622
Aminomethyltransferase, mitochondrial-like.
 0.998
LOC114779533
Glycine cleavage system H protein, mitochondrial-like.
 
 0.995
ENSDCDP00000038350
Aminomethyltransferase.
 0.995
LOC114766090
Glycine cleavage system H protein, mitochondrial-like.
 
 0.995
shmt1
Serine hydroxymethyltransferase 1.
  
 
 0.990
shmt2
Serine hydroxymethyltransferase 2.
  
 
 0.990
sardh
Sarcosine dehydrogenase.
  
 0.989
pdpr
Pyruvate dehydrogenase phosphatase regulatory subunit.
  
 0.987
dmgdh
Dimethylglycine dehydrogenase.
 
 0.984
mthfd2
annotation not available
  
 
 0.983
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.