STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114795678Double homeobox protein 4-like protein 4. (321 aa)    
Predicted Functional Partners:
TIMM22
Translocase of inner mitochondrial membrane 22.
    
 0.949
timm9
Translocase of inner mitochondrial membrane 9.
   
 0.934
timm10
Translocase of inner mitochondrial membrane 10.
   
 0.923
sdhd
Succinate dehydrogenase complex subunit D.
    
 0.820
cisd2
CDGSH iron sulfur domain 2.
    
 0.738
cactin
Cactin, spliceosome C complex subunit.
    
 0.738
otx1
Orthodenticle homeobox 1.
    
0.723
LOC114785788
Homeobox protein OTX1 B-like.
    
0.723
sdhc
Succinate dehydrogenase complex subunit C.
    
 0.660
LOC114793712
Homeobox protein otx5-like.
    
0.654
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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