STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fam98bFamily with sequence similarity 98 member B. (360 aa)    
Predicted Functional Partners:
rtraf
RNA transcription, translation and transport factor.
    
 0.995
rtcb
RNA 2',3'-cyclic phosphate and 5'-OH ligase.
    
 0.995
c9h2orf49
Chromosome 9 C2orf49 homolog.
    
 0.994
zbtb8os
Zinc finger and BTB domain containing 8 opposite strand.
    
 0.952
fam98a
Family with sequence similarity 98 member A.
  
 
 
0.935
UNC79
Unc-79 homolog, NALCN channel complex subunit.
    
 0.896
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.848
kdm6a
Lysine demethylase 6A.
    
 0.748
LOC114764398
Lysine-specific demethylase 6A-like.
    
 0.748
LOC114796491
E3 SUMO-protein ligase RanBP2-like.
    
 0.715
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.