STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114780914Erlin-1. (363 aa)    
Predicted Functional Partners:
RNF5
Ring finger protein 5.
   
 0.794
rnf185
Ring finger protein 185.
   
 0.794
rnf170
Ring finger protein 170.
    
 
 0.762
cwc25
CWC25 spliceosome associated protein homolog.
   
    0.758
alg11
ALG11 alpha-1,2-mannosyltransferase.
   
    0.758
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
     
 0.733
derl1
Derlin 1.
    
 0.729
ENSDCDP00000038449
annotation not available
    
 0.711
tmub1
Transmembrane and ubiquitin like domain containing 1.
    
 
 0.702
sel1l3
SEL1L family member 3.
     
 0.689
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.