STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
c1ql3Complement C1q like 3. (260 aa)    
Predicted Functional Partners:
LOC114792097
Complement C1q subcomponent subunit C-like.
    
 
0.527
lig1
DNA ligase 1.
    
 0.523
itgb6
Integrin subunit beta 6.
    
 0.509
itgb4
Integrin subunit beta 4.
    
 0.509
mysm1
Myb like, SWIRM and MPN domains 1.
    
 0.497
taf5
TATA-box binding protein associated factor 5.
    
  0.484
ENSDCDP00000055889
annotation not available
    
 0.481
trrap
Transformation/transcription domain associated protein.
    
  0.479
taf12
TATA-box binding protein associated factor 12.
    
  0.479
ENSDCDP00000007219
Collagen, type VI, alpha 1.
   
 0.475
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.