STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSDCDP00000023386Zgc:165656. (165 aa)    
Predicted Functional Partners:
xrcc5
X-ray repair cross complementing 5.
    
 
 0.948
xrcc6
X-ray repair cross complementing 6.
    
 
 0.932
xrcc1
X-ray repair cross complementing 1.
    
 
 0.921
lig4
DNA ligase 4.
    
 
 0.823
parp1
poly(ADP-ribose) polymerase 1.
    
 
 0.814
polb
DNA polymerase beta.
    
 
 0.789
tdp1
tyrosyl-DNA phosphodiesterase 1.
    
 
 0.783
parp2
poly(ADP-ribose) polymerase 2.
    
 
 0.745
chd1l
Chromodomain helicase DNA binding protein 1 like.
    
 
 0.717
LOC114800731
Protein mono-ADP-ribosyltransferase PARP3-like.
    
 
 0.715
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.