mre11 protein (Denticeps clupeoides) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

mre11

MRE11 homolog, double strand break repair nuclease. (687 aa)

Predicted Functional Partners:

nbn

0.999

wrn

0.999

rad50

0.999

atm

0.997

ENSDCDP00000054111

0.997

ENSDCDP00000054113

0.997

rbbp8

0.995

exo1

0.995

ENSDCDP00000003032

0.993

ENSDCDP00000003104

0.993

Your Current Organism:

Denticeps clupeoides

NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSDCDP00000003032	ENSDCDP00000054111	ENSDCDP00000003032	ENSDCDP00000054111	annotation not available	annotation not available	0.983
ENSDCDP00000003032	ENSDCDP00000054113	ENSDCDP00000003032	ENSDCDP00000054113	annotation not available	annotation not available	0.983
ENSDCDP00000003032	atm	ENSDCDP00000003032	ENSDCDP00000053611	annotation not available	ATM serine/threonine kinase.	0.981
ENSDCDP00000003032	exo1	ENSDCDP00000003032	ENSDCDP00000054679	annotation not available	Exonuclease 1.	0.897
ENSDCDP00000003032	mre11	ENSDCDP00000003032	ENSDCDP00000026990	annotation not available	MRE11 homolog, double strand break repair nuclease.	0.993
ENSDCDP00000003032	nbn	ENSDCDP00000003032	ENSDCDP00000025327	annotation not available	Nibrin.	0.985
ENSDCDP00000003032	rad50	ENSDCDP00000003032	ENSDCDP00000061323	annotation not available	RAD50 double strand break repair protein.	0.986
ENSDCDP00000003032	rbbp8	ENSDCDP00000003032	ENSDCDP00000000848	annotation not available	RB binding protein 8, endonuclease.	0.993
ENSDCDP00000003032	wrn	ENSDCDP00000003032	ENSDCDP00000047875	annotation not available	WRN RecQ like helicase.	0.942
ENSDCDP00000003104	ENSDCDP00000054111	ENSDCDP00000003104	ENSDCDP00000054111	annotation not available	annotation not available	0.983
ENSDCDP00000003104	ENSDCDP00000054113	ENSDCDP00000003104	ENSDCDP00000054113	annotation not available	annotation not available	0.983
ENSDCDP00000003104	atm	ENSDCDP00000003104	ENSDCDP00000053611	annotation not available	ATM serine/threonine kinase.	0.981
ENSDCDP00000003104	exo1	ENSDCDP00000003104	ENSDCDP00000054679	annotation not available	Exonuclease 1.	0.897
ENSDCDP00000003104	mre11	ENSDCDP00000003104	ENSDCDP00000026990	annotation not available	MRE11 homolog, double strand break repair nuclease.	0.993
ENSDCDP00000003104	nbn	ENSDCDP00000003104	ENSDCDP00000025327	annotation not available	Nibrin.	0.985
ENSDCDP00000003104	rad50	ENSDCDP00000003104	ENSDCDP00000061323	annotation not available	RAD50 double strand break repair protein.	0.986
ENSDCDP00000003104	rbbp8	ENSDCDP00000003104	ENSDCDP00000000848	annotation not available	RB binding protein 8, endonuclease.	0.993
ENSDCDP00000003104	wrn	ENSDCDP00000003104	ENSDCDP00000047875	annotation not available	WRN RecQ like helicase.	0.942
ENSDCDP00000054111	ENSDCDP00000003032	ENSDCDP00000054111	ENSDCDP00000003032	annotation not available	annotation not available	0.983
ENSDCDP00000054111	ENSDCDP00000003104	ENSDCDP00000054111	ENSDCDP00000003104	annotation not available	annotation not available	0.983