STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rtf1RTF1 homolog, Paf1/RNA polymerase II complex component. (680 aa)    
Predicted Functional Partners:
paf1
PAF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.999
cdc73
Cell division cycle 73.
   
 0.999
LOC114788971
FACT complex subunit SSRP1-like.
   
 0.999
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.999
ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component.
   
 0.999
supt5h
SPT5 homolog, DSIF elongation factor subunit.
    
 0.998
supt6h
SPT6 homolog, histone chaperone and transcription elongation factor.
   
 0.998
supt16h
SPT16 homolog, facilitates chromatin remodeling subunit.
   
 0.998
wdr61
WD repeat domain 61.
    
 0.995
LOC114780443
Transcription elongation factor SPT6-like.
   
 0.992
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.