STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tfptTCF3 fusion partner. (204 aa)    
Predicted Functional Partners:
ino80e
INO80 complex subunit E.
   
 0.994
actr8
Actin related protein 8.
    
 0.984
bap1
BRCA1 associated protein 1.
   
 0.979
LOC114796425
INO80 complex subunit D-like.
    
 0.979
ino80
INO80 complex ATPase subunit.
    
 0.975
ino80c
INO80 complex subunit C.
    
 0.974
actr5
Actin related protein 5.
    
 0.974
mcrs1
Microspherule protein 1.
   
 0.974
nfrkb
Nuclear factor related to kappaB binding protein.
    
 0.972
ruvbl2
RuvB like AAA ATPase 2.
   
 0.972
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.