STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSDCDP00000028679annotation not available (295 aa)    
Predicted Functional Partners:
ppie
Peptidylprolyl isomerase E.
    
 0.941
snw1
SNW domain containing 1.
    
 0.926
prpf8
pre-mRNA processing factor 8.
    
   0.919
sf3b2
Splicing factor 3b subunit 2.
    
   0.918
LOC114774577
RNA helicase aquarius-like.
    
 0.905
aqr
Aquarius intron-binding spliceosomal factor.
    
 0.905
xab2
XPA binding protein 2.
    
 0.871
LOC114788676
pre-mRNA-processing factor 19-like.
    
 0.859
LOC114768229
pre-mRNA-processing factor 19.
    
 0.859
crnkl1
Crooked neck pre-mRNA splicing factor 1.
   
 
 0.856
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.