STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSDCDP00000031697Si:ch211-156b7.4. (178 aa)    
Predicted Functional Partners:
rhbdl3
Rhomboid like 3.
    
  0.609
wdr18
WD repeat domain 18.
   
 0.609
pes1
Pescadillo ribosomal biogenesis factor 1.
   
 0.592
tex10
Testis expressed 10.
   
 0.566
LOC114790030
Testis-expressed protein 10 homolog.
   
 0.566
LOC114800132
H-2 class II histocompatibility antigen, A-R alpha chain-like.
   
  0.559
LOC114800133
H-2 class II histocompatibility antigen, A-U alpha chain-like.
   
  0.559
LOC114786036
Inactive tyrosine-protein kinase 7-like.
   
  0.540
PTK7
Protein tyrosine kinase 7 (inactive).
   
  0.540
ripk4
Receptor interacting serine/threonine kinase 4.
   
 0.523
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.