STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114800534Rho GTPase-activating protein 39-like. (1112 aa)    
Predicted Functional Partners:
LOC114786940
Rho-related GTP-binding protein RhoF-like.
    
  0.653
rhbdl3
Rhomboid like 3.
    
  0.609
wdr18
WD repeat domain 18.
   
 0.609
pes1
Pescadillo ribosomal biogenesis factor 1.
   
 0.592
arhgap1
Rho GTPase activating protein 1.
     
0.589
lmnb1
Lamin B1.
    
  0.577
lmnb2
Lamin B2.
    
  0.577
lmna
Lamin A/C.
    
  0.577
LOC114765701
lamin-L(III)-like.
    
  0.577
RPL3L
Ribosomal protein L3 like.
    
 0.565
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.