STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114802195Retinal homeobox protein Rx1-like. (327 aa)    
Predicted Functional Partners:
LOC114786512
LIM domain-binding protein 1-like.
    
 0.537
LOC114787848
LIM domain-binding protein 2-like.
    
 0.537
ldb1
LIM domain binding 1.
    
 0.537
ldb2
LIM domain binding 2.
    
 0.537
ENSDCDP00000002138
annotation not available
    
 0.510
ENSDCDP00000002498
annotation not available
    
 0.510
srf
Serum response factor.
    
 0.510
LOC114795879
RPE-retinal G protein-coupled receptor-like.
    
 
 0.506
ascl1
Achaete-scute family bHLH transcription factor 1.
   
 0.506
tpk1
Thiamin pyrophosphokinase 1.
    
  0.501
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.