STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sox13SRY-box transcription factor 13. (628 aa)    
Predicted Functional Partners:
cep85
Centrosomal protein 85.
    
 
 0.796
sox5
SRY-box transcription factor 5.
    
 
0.763
LOC114792797
Chromatin complexes subunit BAP18-like.
    
  0.716
LOC114802271
Chromatin complexes subunit BAP18-like.
    
  0.716
LOC114793556
Nucleosome-remodeling factor subunit BPTF-like.
    
  0.713
BPTF
Bromodomain PHD finger transcription factor.
    
  0.713
CTNNB1
Catenin beta-1.
   
 0.596
LOC114786096
Junction plakoglobin-like.
   
 0.596
ENSDCDP00000022664
annotation not available
   
 0.596
LOC114796733
Catenin beta-1-like.
   
 0.596
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.