STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114790652Phosphatidylinositol 4-phosphate 5-kinase type-1 beta-like. (520 aa)    
Predicted Functional Partners:
synj1
Synaptojanin 1.
    
 0.897
LOC114779131
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3-A-like.
   
 0.895
LOC114794470
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-3-A-like.
   
 0.895
plch1
Phospholipase C eta 1.
   
 0.895
LOC114788057
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1-like.
   
 0.892
plcd1
Phospholipase C delta 1.
   
 0.890
LOC114800080
Phosphatidylinositol 4-kinase alpha-like.
   
 0.890
LOC114790124
Phosphatidylinositol 4-kinase alpha-like.
   
 0.890
inpp5e
Inositol polyphosphate-5-phosphatase E.
     
 0.887
LOC114798488
Rho-related GTP-binding protein RhoA-C.
    
 0.883
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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