STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114795322Reticulon-4-like. (198 aa)    
Predicted Functional Partners:
bace2
Beta-secretase 2.
   
 0.705
bace1
Beta-secretase 1.
   
 0.705
vta1
Vesicle trafficking 1.
    
   0.658
LOC114803327
Vacuolar protein sorting-associated protein VTA1 homolog.
    
   0.658
snx15
Sorting nexin 15.
    
   0.635
dpm1
Dolichyl-phosphate mannosyltransferase subunit 1, catalytic.
    
 0.584
REEP6
Receptor expression-enhancing protein 5-like.
    
 
 0.578
reep6
Receptor accessory protein 6.
    
 
 0.578
LOC114794436
Reticulon-4 receptor-like.
    
 0.573
rtn4r
Reticulon 4 receptor.
    
 0.573
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.