STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
psmd7Proteasome 26S subunit, non-ATPase 7. (323 aa)    
Predicted Functional Partners:
PSMC1
Proteasome 26S subunit, ATPase 1.
   
 0.999
psma3
Proteasome 20S subunit alpha 3.
   
 0.999
psmd14
Proteasome 26S subunit, non-ATPase 14.
   
 0.999
psmb3
Proteasome 20S subunit beta 3.
   
 0.999
LOC114763414
26S proteasome regulatory subunit 4.
   
 0.999
psmb4
Proteasome 20S subunit beta 4.
   
 0.999
psmc5
Proteasome 26S subunit, ATPase 5.
   
 0.999
psmd6
Proteasome 26S subunit, non-ATPase 6.
   
 0.999
LOC114788345
26S proteasome non-ATPase regulatory subunit 4-like.
   
 0.999
psmd11
Proteasome 26S subunit, non-ATPase 11.
   
 0.999
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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