STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mbd3methyl-CpG binding domain protein 3. (243 aa)    
Predicted Functional Partners:
mta2
Metastasis associated 1 family member 2.
   
 0.949
mta1
Metastasis associated 1.
   
 0.932
LOC114764546
Metastasis-associated protein MTA3-like.
   
 0.932
hdac8
Histone deacetylase 8.
    
 0.916
HDAC2
Histone deacetylase 2.
    
 0.916
hdac1
Histone deacetylase 1.
    
 0.916
LOC114788184
Histone-binding protein RBBP4-like.
    
 0.907
LOC114790404
Histone-binding protein RBBP7.
    
 0.907
LOC114770055
Histone-binding protein RBBP4.
    
 0.907
hdac3
Histone deacetylase 3.
    
 0.887
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.