STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114766571PHD finger protein 21A-like. (766 aa)    
Predicted Functional Partners:
kdm1a
Lysine demethylase 1A.
    
 0.982
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 0.968
LOC114802309
annotation not available
    
 0.955
xpc
XPC complex subunit, DNA damage recognition and repair factor.
    
 0.912
pold1
DNA polymerase delta 1, catalytic subunit.
  
 0.911
xrcc6
X-ray repair cross complementing 6.
    
 0.911
ercc4
ERCC excision repair 4, endonuclease catalytic subunit.
   
 0.910
tp53bp1
Tumor protein p53 binding protein 1.
   
 0.909
ercc8
ERCC excision repair 8, CSA ubiquitin ligase complex subunit.
    
 0.909
xrcc5
X-ray repair cross complementing 5.
    
 0.898
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.