STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114794420Protein LSM12 homolog A. (194 aa)    
Predicted Functional Partners:
atxn2
Ataxin 2.
    
 0.969
atxn2l
Ataxin 2 like.
    
 0.969
LOC114791088
Probable ATP-dependent RNA helicase ddx6.
    
 
 0.752
LOC114770003
Probable ATP-dependent RNA helicase ddx6.
    
 
 0.752
ddx6
DEAD-box helicase 6.
    
 
 0.752
LOC114789189
tRNA selenocysteine 1-associated protein 1-like.
    
   0.726
LOC114770255
tRNA selenocysteine 1-associated protein 1-like.
    
   0.726
ddx20
DEAD-box helicase 20.
    
 0.651
pum1
Pumilio RNA binding family member 1.
    
   0.622
LOC114803250
Pumilio homolog 2-like.
    
   0.622
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.