STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gabpb1GA binding protein transcription factor subunit beta 1. (378 aa)    
Predicted Functional Partners:
gabpa
GA binding protein transcription factor subunit alpha.
    
 0.973
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.778
casp2
Caspase 2.
    
  0.749
ift81
Intraflagellar transport 81.
    
 0.644
ift80
Intraflagellar transport 80.
  
 0.611
ift22
Intraflagellar transport 22.
    
 0.608
rps3
Ribosomal protein S3.
    
 0.598
mars1
methionyl-tRNA synthetase 1.
   
 0.597
tp63
Tumor protein p63.
    
  0.595
tp73
Tumor protein p73.
    
  0.595
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.