STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114798029Agmatinase, mitochondrial-like. (355 aa)    
Predicted Functional Partners:
oat
Ornithine aminotransferase.
  
 0.958
srm
Spermidine synthase.
  
 
 0.930
otc
Ornithine carbamoyltransferase.
   
 0.922
sms
Spermine synthase.
  
 
 0.901
aldh4a1
Aldehyde dehydrogenase 4 family member A1.
  
 
 0.884
aldh5a1
Aldehyde dehydrogenase 5 family member A1.
  
 
 0.874
aoc1
Amine oxidase copper containing 1.
    
 0.873
got2
Glutamic-oxaloacetic transaminase 2.
   
 
 0.871
KDM1B
Lysine demethylase 1B.
    
 0.868
aass
Aminoadipate-semialdehyde synthase.
    
 0.868
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.