STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC114767053tRNA-dihydrouridine(20) synthase [NAD(P)+]-like. (518 aa)    
Predicted Functional Partners:
EPRS1
Bifunctional glutamate/proline--tRNA ligase-like.
  
 
 0.994
LOC114800404
Bifunctional glutamate/proline--tRNA ligase-like.
  
 
 0.994
brix1
Biogenesis of ribosomes BRX1.
   
    0.765
thumpd1
THUMP domain containing 1.
  
 
 0.723
gnl2
G protein nucleolar 2.
   
    0.676
pus3
Pseudouridine synthase 3.
  
 
 0.671
dus1l
Dihydrouridine synthase 1 like.
   
  
0.638
utp3
UTP3 small subunit processome component.
   
    0.634
bud23
BUD23 rRNA methyltransferase and ribosome maturation factor.
  
    0.626
nsun5
NOP2/Sun RNA methyltransferase 5.
  
 
 0.623
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.