STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpgrip1lRPGRIP1 like. (1268 aa)    
Predicted Functional Partners:
NPHP4
Nephrocystin 4.
    
 0.987
nphp1
Nephrocystin 1.
    
 0.945
LOC114789944
Transcriptional regulator ATRX-like.
    
 
 0.858
flcn
Folliculin.
    
 0.840
LOC114788173
Ras-related protein Rab-11B-like.
   
  0.731
LOC114789963
Ras-related protein Rab-11A-like.
   
  0.731
LOC114802485
Ras-related protein Rab-11B.
   
  0.731
LOC114802482
Ras-related protein Rab-11B-like.
   
  0.731
rab11a
RAB11A, member RAS oncogene family.
   
  0.731
rcc1
Regulator of chromosome condensation 1.
    
 
 0.719
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.