STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
atg16l1Autophagy related 16 like 1. (617 aa)    
Predicted Functional Partners:
ENSDCDP00000010668
ATG12 autophagy related 12 homolog (S. cerevisiae).
    
 0.995
atg5
Autophagy related 5.
   
 0.995
atg3
Autophagy related 3.
   
 0.992
wipi2
WD repeat domain, phosphoinositide interacting 2.
   
 0.985
WIPI1
WD repeat domain phosphoinositide-interacting protein 1-like.
   
 0.982
LOC114794839
WD repeat domain phosphoinositide-interacting protein 1-like.
   
 0.982
ENSDCDP00000031851
annotation not available
    
 0.981
LOC114768248
Ras-related protein Rab-33B-like.
    
 0.981
LOC114787673
RB1-inducible coiled-coil protein 1-like.
   
 0.962
RB1CC1
RB1-inducible coiled-coil protein 1-like.
   
 0.962
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.