STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
btbd6BTB domain containing 6. (483 aa)    
Predicted Functional Partners:
LOC114786024
NEDD8.
    
  0.682
bbs9
Bardet-Biedl syndrome 9.
    
 0.679
GAN
Gigaxonin.
     
 0.665
LOC114788188
NEDD8-like.
    
  0.653
LOC114801016
Cullin-associated NEDD8-dissociated protein 1-like.
     
 0.653
cand1
Cullin associated and neddylation dissociated 1.
     
 0.653
nae1
NEDD8 activating enzyme E1 subunit 1.
     
 0.652
ttc8
Tetratricopeptide repeat domain 8.
    
 0.649
ube2f
Ubiquitin conjugating enzyme E2 F (putative).
    
  0.648
ube2m
Ubiquitin conjugating enzyme E2 M.
    
  0.648
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.