STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccnl1Cyclin L1. (563 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
   
 
 0.952
nelfe
Negative elongation factor complex member E.
     
 0.800
wdr61
WD repeat domain 61.
    
 0.757
cdc73
Cell division cycle 73.
     
 0.755
ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component.
     
 0.704
supt5h
SPT5 homolog, DSIF elongation factor subunit.
     
 0.694
cdk10
Cyclin dependent kinase 10.
   
 
 0.694
LOC114798162
Cyclin-dependent kinase 11B-like.
   
 
 0.694
paf1
PAF1 homolog, Paf1/RNA polymerase II complex component.
     
 0.693
LOC114788971
FACT complex subunit SSRP1-like.
     
 0.675
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.