STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cir1Corepressor interacting with RBPJ, 1. (435 aa)    
Predicted Functional Partners:
snw1
SNW domain containing 1.
   
 
 0.952
LOC114792191
Histone deacetylase complex subunit SAP30L.
    
 0.941
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
    
 0.935
LOC114788205
Recombining binding protein suppressor of hairless-like.
    
 0.934
cwc25
CWC25 spliceosome associated protein homolog.
   
 
 0.933
LOC114800957
Recombining binding protein suppressor of hairless-like protein.
    
 0.927
ncor2
Nuclear receptor corepressor 2.
    
 0.926
dhx38
DEAH-box helicase 38.
   
 
 0.922
HDAC2
Histone deacetylase 2.
    
 0.898
hdac1
Histone deacetylase 1.
    
 0.898
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.