STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSDCDP00000058725annotation not available (252 aa)    
Predicted Functional Partners:
apaf1
Apoptotic peptidase activating factor 1.
   
 0.813
pold2
DNA polymerase delta 2, accessory subunit.
    
 0.766
fancm
FA complementation group M.
    
 0.763
arid4a
AT-rich interaction domain 4A.
    
  0.739
arid4b
AT-rich interaction domain 4B.
    
  0.739
pold1
DNA polymerase delta 1, catalytic subunit.
   
 0.736
pold4
DNA polymerase delta 4, accessory subunit.
    
 0.724
mus81
MUS81 structure-specific endonuclease subunit.
    
 0.693
snrpe
Small nuclear ribonucleoprotein polypeptide E.
   
 0.687
ENSDCDP00000039398
Small nuclear ribonucleoprotein polypeptide F.
    
  0.670
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.