STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDH18Cadherin-18-like. (851 aa)    
Predicted Functional Partners:
CDH20
Cadherin-20-like.
     
0.854
cdh13
Cadherin 13.
     
0.852
LOC114786096
Junction plakoglobin-like.
    
 0.825
LOC114793398
Junction plakoglobin-like.
    
 0.825
CTNNB1
Catenin beta-1.
    
 0.810
ENSDCDP00000022664
annotation not available
    
 0.810
LOC114796733
Catenin beta-1-like.
    
 0.810
ENSDCDP00000015674
annotation not available
    
 0.790
ctnna1
Catenin alpha 1.
    
 0.790
ctnna2
Catenin alpha 2.
    
 0.790
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.