STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uvssaUV stimulated scaffold protein A. (730 aa)    
Predicted Functional Partners:
usp7
Ubiquitin specific peptidase 7.
    
 0.997
ercc8
ERCC excision repair 8, CSA ubiquitin ligase complex subunit.
    
 
 0.976
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 
 0.960
ercc6
ERCC excision repair 6, chromatin remodeling factor.
    
 
 0.946
gtf2h1
General transcription factor IIH subunit 1.
    
 
 0.934
ddb1
Damage specific DNA binding protein 1.
    
 
 0.924
LOC114796921
DNA-directed RNA polymerase II subunit RPB1-like.
    
 
 0.890
wdr61
WD repeat domain 61.
    
 
 0.881
polr2f
RNA polymerase II subunit F.
    
 
 0.848
ctr9
CTR9 homolog, Paf1/RNA polymerase II complex component.
    
 
 0.829
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.