STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
WDR7WD repeat domain 7. (1479 aa)    
Predicted Functional Partners:
leo1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 0.999
ttc37
Tetratricopeptide repeat domain 37.
    
 0.969
skiv2l
Ski2 like RNA helicase.
    
 0.955
cdc73
Cell division cycle 73.
    
 0.932
paf1
PAF1 homolog, Paf1/RNA polymerase II complex component.
   
 0.919
rtf1
RTF1 homolog, Paf1/RNA polymerase II complex component.
    
 0.883
ddb1
Damage specific DNA binding protein 1.
    
 0.865
ddx20
DEAD-box helicase 20.
   
 0.864
ercc6
ERCC excision repair 6, chromatin remodeling factor.
   
 0.855
ercc8
ERCC excision repair 8, CSA ubiquitin ligase complex subunit.
    
 0.850
Your Current Organism:
Denticeps clupeoides
NCBI taxonomy Id: 299321
Other names: D. clupeoides, denticle herring
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.