B4U80_03280 protein (Leptotrombidium deliense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B4U80_03280

Endoribonuclease Dicer-like protein. (92 aa)

Predicted Functional Partners:

B4U80_13416

0.821

B4U80_10600

0.821

B4U80_09098

0.787

B4U80_13250

0.759

B4U80_07280

0.759

B4U80_10840

0.748

B4U80_06996

0.748

B4U80_03322

0.734

B4U80_12886

0.729

B4U80_04656

0.728

Your Current Organism:

Leptotrombidium deliense

NCBI taxonomy Id: 299467
Other names: L. deliense, scrub typhus mite

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B4U80_03280	B4U80_03322	A0A443QD95	A0A443SC50	Endoribonuclease Dicer-like protein.	39S ribosomal protein L17-like protein.	0.734
B4U80_03280	B4U80_04656	A0A443QD95	A0A443SVE6	Endoribonuclease Dicer-like protein.	28S ribosomal protein S16-like protein.	0.728
B4U80_03280	B4U80_06996	A0A443QD95	A0A443SVB9	Endoribonuclease Dicer-like protein.	39S ribosomal protein L19-like protein.	0.748
B4U80_03280	B4U80_07280	A0A443QD95	A0A443SLY7	Endoribonuclease Dicer-like protein.	Double-stranded RNA-binding protein Staufen-like protein.	0.759
B4U80_03280	B4U80_09098	A0A443QD95	A0A443SGA9	Endoribonuclease Dicer-like protein.	DRBM domain-containing protein.	0.787
B4U80_03280	B4U80_10600	A0A443QD95	A0A443SIH9	Endoribonuclease Dicer-like protein.	Interferon-inducible double-stranded RNA-dependent protein kinase activator A-like isoform X2.	0.821
B4U80_03280	B4U80_10840	A0A443QD95	A0A443SEP7	Endoribonuclease Dicer-like protein.	28S ribosomal protein S9-like protein.	0.748
B4U80_03280	B4U80_12886	A0A443QD95	A0A443SIC8	Endoribonuclease Dicer-like protein.	Putative 28S ribosomal protein S6-like protein.	0.729
B4U80_03280	B4U80_13250	A0A443QD95	A0A443S9M9	Endoribonuclease Dicer-like protein.	DRBM domain-containing protein.	0.759
B4U80_03280	B4U80_13416	A0A443QD95	A0A443S6Y2	Endoribonuclease Dicer-like protein.	Interferon-inducible double-stranded RNA-dependent protein kinase activator A-like isoform X2.	0.821
B4U80_03322	B4U80_03280	A0A443SC50	A0A443QD95	39S ribosomal protein L17-like protein.	Endoribonuclease Dicer-like protein.	0.734
B4U80_03322	B4U80_04656	A0A443SC50	A0A443SVE6	39S ribosomal protein L17-like protein.	28S ribosomal protein S16-like protein.	0.999
B4U80_03322	B4U80_06996	A0A443SC50	A0A443SVB9	39S ribosomal protein L17-like protein.	39S ribosomal protein L19-like protein.	0.999
B4U80_03322	B4U80_10840	A0A443SC50	A0A443SEP7	39S ribosomal protein L17-like protein.	28S ribosomal protein S9-like protein.	0.999
B4U80_03322	B4U80_12886	A0A443SC50	A0A443SIC8	39S ribosomal protein L17-like protein.	Putative 28S ribosomal protein S6-like protein.	0.999
B4U80_04656	B4U80_03280	A0A443SVE6	A0A443QD95	28S ribosomal protein S16-like protein.	Endoribonuclease Dicer-like protein.	0.728
B4U80_04656	B4U80_03322	A0A443SVE6	A0A443SC50	28S ribosomal protein S16-like protein.	39S ribosomal protein L17-like protein.	0.999
B4U80_04656	B4U80_06996	A0A443SVE6	A0A443SVB9	28S ribosomal protein S16-like protein.	39S ribosomal protein L19-like protein.	0.999
B4U80_04656	B4U80_10840	A0A443SVE6	A0A443SEP7	28S ribosomal protein S16-like protein.	28S ribosomal protein S9-like protein.	0.999
B4U80_04656	B4U80_12886	A0A443SVE6	A0A443SIC8	28S ribosomal protein S16-like protein.	Putative 28S ribosomal protein S6-like protein.	0.999