STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4U80_12630Nucleolin-like isoform X1. (72 aa)    
Predicted Functional Partners:
B4U80_08402
Eukaryotic translation initiation factor 3 subunit A; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.
   
 
 0.911
B4U80_03492
Nop domain-containing protein.
   
 0.831
B4U80_05416
rRNA 2'-O-methyltransferase fibrillarin-like isoform X1.
   
 0.827
B4U80_09278
Nuclear cap-binding protein subunit 2; Component of the cap-binding complex (CBC), which binds co- transcriptionally to the 5' cap of pre-mRNAs and is involved in various processes such as pre-mRNA splicing and RNA-mediated gene silencing (RNAi). The CBC complex is involved in miRNA-mediated RNA interference and is required for primary microRNAs (miRNAs) processing. Also involved in innate immunity via the short interfering RNAs (siRNAs) processing machinery by restricting the viral RNA production. In the CBC complex, Cbp20 recognizes and binds capped RNAs (m7GpppG-capped RNA) but requ [...]
   
 0.788
B4U80_05179
Translation initiation factor 4F: cap-binding subunit-like protein; Belongs to the eukaryotic initiation factor 4E family.
   
 0.788
B4U80_10742
Uncharacterized protein; Belongs to the eukaryotic initiation factor 4E family.
   
 0.788
B4U80_08868
Nucleolar protein 56-like isoform X1.
   
 0.784
B4U80_03043
PAB-dependent poly(A)-specific ribonuclease subunit PAN2-like protein.
    
 0.782
B4U80_04209
PAB-dependent poly(A)-specific ribonuclease subunit PAN3-like protein.
    
 0.740
B4U80_06679
PAB-dependent poly(A)-specific ribonuclease subunit PAN3-like protein.
    
 0.740
Your Current Organism:
Leptotrombidium deliense
NCBI taxonomy Id: 299467
Other names: L. deliense, scrub typhus mite
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