STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4U80_11350Reverse transcriptase Ty1/copia-type domain-containing protein. (268 aa)    
Predicted Functional Partners:
B4U80_05037
RxLR effector candidate protein-like protein.
 
     0.874
B4U80_08526
Gag-pol polyprotein-like protein.
 
     0.620
B4U80_01276
Copia protein-like protein.
 
     0.541
B4U80_02270
RxLR effector candidate protein-like protein.
 
     0.538
B4U80_02478
Integrase core domain protein-like protein.
  
     0.506
B4U80_04748
Copia protein-like protein.
  
     0.468
B4U80_08793
Copia protein-like protein.
  
     0.465
B4U80_02401
Protein lin-52-like isoform X2.
    
 0.450
B4U80_04818
Protein lin-54-like protein.
    
 0.436
B4U80_09680
Protein lin-9-like protein.
    
 0.418
Your Current Organism:
Leptotrombidium deliense
NCBI taxonomy Id: 299467
Other names: L. deliense, scrub typhus mite
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