B4U80_05902 protein (Leptotrombidium deliense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B4U80_05902

Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (197 aa)

Predicted Functional Partners:

B4U80_10737

0.999

B4U80_09155

0.999

B4U80_01358

0.999

B4U80_07122

0.999

B4U80_02979

0.999

B4U80_01449

0.999

B4U80_05661

0.999

B4U80_07621

0.999

B4U80_02595

0.999

B4U80_04756

0.999

Your Current Organism:

Leptotrombidium deliense

NCBI taxonomy Id: 299467
Other names: L. deliense, scrub typhus mite

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B4U80_01358	B4U80_01449	A0A443RXM4	A0A443S129	Ribosomal protein L35-like protein.	60S ribosomal protein L8-like protein.	0.999
B4U80_01358	B4U80_02595	A0A443RXM4	A0A443S3I2	Ribosomal protein L35-like protein.	60S ribosomal protein L30-like protein.	0.998
B4U80_01358	B4U80_02979	A0A443RXM4	A0A443S0Y5	Ribosomal protein L35-like protein.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.999
B4U80_01358	B4U80_04756	A0A443RXM4	A0A443S550	Ribosomal protein L35-like protein.	60S ribosomal protein L35a-like protein.	0.999
B4U80_01358	B4U80_05661	A0A443RXM4	A0A443S1V8	Ribosomal protein L35-like protein.	60S ribosomal protein L30-like protein.	0.998
B4U80_01358	B4U80_05902	A0A443RXM4	A0A443S6E1	Ribosomal protein L35-like protein.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
B4U80_01358	B4U80_07122	A0A443RXM4	A0A443RYN2	Ribosomal protein L35-like protein.	Ribosomal_S27 domain-containing protein.	0.999
B4U80_01358	B4U80_07621	A0A443RXM4	A0A443S239	Ribosomal protein L35-like protein.	Ribosomal protein L37; Binds to the 23S rRNA.	0.999
B4U80_01358	B4U80_09155	A0A443RXM4	A0A443QFP5	Ribosomal protein L35-like protein.	40S ribosomal protein S13-like protein; Belongs to the universal ribosomal protein uS15 family.	0.999
B4U80_01358	B4U80_10737	A0A443RXM4	A0A443QC11	Ribosomal protein L35-like protein.	40S ribosomal protein S27-like protein.	0.999
B4U80_01449	B4U80_01358	A0A443S129	A0A443RXM4	60S ribosomal protein L8-like protein.	Ribosomal protein L35-like protein.	0.999
B4U80_01449	B4U80_02595	A0A443S129	A0A443S3I2	60S ribosomal protein L8-like protein.	60S ribosomal protein L30-like protein.	0.998
B4U80_01449	B4U80_02979	A0A443S129	A0A443S0Y5	60S ribosomal protein L8-like protein.	40S ribosomal protein S24; Belongs to the eukaryotic ribosomal protein eS24 family.	0.999
B4U80_01449	B4U80_04756	A0A443S129	A0A443S550	60S ribosomal protein L8-like protein.	60S ribosomal protein L35a-like protein.	0.999
B4U80_01449	B4U80_05661	A0A443S129	A0A443S1V8	60S ribosomal protein L8-like protein.	60S ribosomal protein L30-like protein.	0.998
B4U80_01449	B4U80_05902	A0A443S129	A0A443S6E1	60S ribosomal protein L8-like protein.	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family.	0.999
B4U80_01449	B4U80_07122	A0A443S129	A0A443RYN2	60S ribosomal protein L8-like protein.	Ribosomal_S27 domain-containing protein.	0.999
B4U80_01449	B4U80_07621	A0A443S129	A0A443S239	60S ribosomal protein L8-like protein.	Ribosomal protein L37; Binds to the 23S rRNA.	0.999
B4U80_01449	B4U80_09155	A0A443S129	A0A443QFP5	60S ribosomal protein L8-like protein.	40S ribosomal protein S13-like protein; Belongs to the universal ribosomal protein uS15 family.	0.999
B4U80_01449	B4U80_10737	A0A443S129	A0A443QC11	60S ribosomal protein L8-like protein.	40S ribosomal protein S27-like protein.	0.999