B4U80_03863 protein (Leptotrombidium deliense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B4U80_03863

ABC transporter-like protein. (621 aa)

Predicted Functional Partners:

B4U80_05114

0.963

B4U80_08131

0.879

B4U80_01250

0.864

B4U80_05956

0.861

B4U80_01976

0.853

B4U80_01358

0.852

B4U80_08041

0.849

B4U80_10340

0.847

B4U80_02479

0.842

B4U80_07269

0.837

Your Current Organism:

Leptotrombidium deliense

NCBI taxonomy Id: 299467
Other names: L. deliense, scrub typhus mite

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B4U80_01250	B4U80_01358	A0A443SN33	A0A443RXM4	Eukaryotic translation initiation factor 5B-like protein.	Ribosomal protein L35-like protein.	0.981
B4U80_01250	B4U80_01976	A0A443SN33	A0A443SSJ4	Eukaryotic translation initiation factor 5B-like protein.	Ribosomal protein rpl23a-like protein; Belongs to the universal ribosomal protein uL23 family.	0.990
B4U80_01250	B4U80_02479	A0A443SN33	A0A443RTT8	Eukaryotic translation initiation factor 5B-like protein.	39S ribosomal protein L21-like protein.	0.888
B4U80_01250	B4U80_03863	A0A443SN33	A0A443SG98	Eukaryotic translation initiation factor 5B-like protein.	ABC transporter-like protein.	0.864
B4U80_01250	B4U80_05114	A0A443SN33	A0A443SGJ7	Eukaryotic translation initiation factor 5B-like protein.	ATP-binding cassette sub-family E member 1-like protein.	0.650
B4U80_01250	B4U80_05956	A0A443SN33	A0A443SI55	Eukaryotic translation initiation factor 5B-like protein.	Mitochondrial ribosomal protein L4-like protein.	0.911
B4U80_01250	B4U80_07269	A0A443SN33	A0A443SAA6	Eukaryotic translation initiation factor 5B-like protein.	60S ribosomal protein L23-like protein; Belongs to the universal ribosomal protein uL14 family.	0.986
B4U80_01250	B4U80_08041	A0A443SN33	A0A443SEW2	Eukaryotic translation initiation factor 5B-like protein.	60S ribosomal protein L11-like isoform X1; Belongs to the universal ribosomal protein uL5 family.	0.989
B4U80_01250	B4U80_08131	A0A443SN33	A0A443S840	Eukaryotic translation initiation factor 5B-like protein.	Uncharacterized protein.	0.921
B4U80_01250	B4U80_10340	A0A443SN33	A0A443SML2	Eukaryotic translation initiation factor 5B-like protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.984
B4U80_01358	B4U80_01250	A0A443RXM4	A0A443SN33	Ribosomal protein L35-like protein.	Eukaryotic translation initiation factor 5B-like protein.	0.981
B4U80_01358	B4U80_01976	A0A443RXM4	A0A443SSJ4	Ribosomal protein L35-like protein.	Ribosomal protein rpl23a-like protein; Belongs to the universal ribosomal protein uL23 family.	0.999
B4U80_01358	B4U80_02479	A0A443RXM4	A0A443RTT8	Ribosomal protein L35-like protein.	39S ribosomal protein L21-like protein.	0.999
B4U80_01358	B4U80_03863	A0A443RXM4	A0A443SG98	Ribosomal protein L35-like protein.	ABC transporter-like protein.	0.852
B4U80_01358	B4U80_05114	A0A443RXM4	A0A443SGJ7	Ribosomal protein L35-like protein.	ATP-binding cassette sub-family E member 1-like protein.	0.788
B4U80_01358	B4U80_05956	A0A443RXM4	A0A443SI55	Ribosomal protein L35-like protein.	Mitochondrial ribosomal protein L4-like protein.	0.991
B4U80_01358	B4U80_07269	A0A443RXM4	A0A443SAA6	Ribosomal protein L35-like protein.	60S ribosomal protein L23-like protein; Belongs to the universal ribosomal protein uL14 family.	0.999
B4U80_01358	B4U80_08041	A0A443RXM4	A0A443SEW2	Ribosomal protein L35-like protein.	60S ribosomal protein L11-like isoform X1; Belongs to the universal ribosomal protein uL5 family.	0.999
B4U80_01358	B4U80_08131	A0A443RXM4	A0A443S840	Ribosomal protein L35-like protein.	Uncharacterized protein.	0.999
B4U80_01358	B4U80_10340	A0A443RXM4	A0A443SML2	Ribosomal protein L35-like protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS13 family.	0.999